Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs2638536 | chr6:119154967 | A/T | 0.000281 | 483 | 16.3 | 14.25 | 21.77 | KM Plot |
| THCA | rs265411 | chr5:114526010 | C/T | 6.88E-8 | 490 | 15.77 | 16.05 | 25.28 | KM Plot |
| THCA | rs265412 | chr5:114530113 | C/G | 0 | 490 | 15.7 | 16.65 | 14.13 | KM Plot |
| THCA | rs2660204 | chr10:52814442 | C/T | 5.71E-6 | 490 | 13.4 | 17.93 | 15.17 | KM Plot |
| THCA | rs267286 | chr5:114645507 | A/C | 0 | 486 | 16.98 | 16.23 | 15.23 | KM Plot |
| THCA | rs267287 | chr5:114645589 | G/A | 0 | 486 | 16.98 | 16.23 | 15.23 | KM Plot |
| THCA | rs267288 | chr5:114645682 | G/A | 0 | 486 | 16.98 | 16.23 | 15.23 | KM Plot |
| THCA | rs267292 | chr5:114638774 | A/G | 0 | 484 | 16.98 | 16.83 | 15.27 | KM Plot |
| THCA | rs2689988 | chr9:132292683 | T/C | 0 | 482 | 9.57 | 15 | 16.23 | KM Plot |
| THCA | rs2711586 | chr15:54232185 | T/C | 4.68E-12 | 490 | 15.63 | 17.83 | 11.8 | KM Plot |
| THCA | rs2711612 | chr15:54218962 | A/G | 4.7E-12 | 490 | 15.32 | 17.88 | 11.8 | KM Plot |
| THCA | rs2711619 | chr15:54209775 | A/C | 4.7E-12 | 490 | 15.7 | 17.23 | 11.8 | KM Plot |
| THCA | rs2711632 | chr15:54240665 | G/A | 2.32E-10 | 485 | 15.65 | 17.93 | 10.97 | KM Plot |
| THCA | rs2725553 | chr15:54222359 | C/A | 0 | 487 | 15.32 | 17.83 | 10.97 | KM Plot |
| THCA | rs2725554 | chr15:54222438 | C/T | 0.000121 | 486 | 15.08 | 17.43 | 15.9 | KM Plot |